Later, Sloane explains to Syd that the CIA forced him to partner with Bomani to stay close to The Covenant. If his pardon is revoked, she says, the death penalty will be reinstated. Sloane tells her that all Omnifam trucks can be tracked with GPS. He offers to give her the tracking codes in return for creature comforts.

At a restaurant, Vaughn tells Lauren that he wants to separate. Lauren says it's about Sydney and storms off — straight to Sark, who tells her to kill her father, which would compel Vaughn to return to her out of compassion. Meanwhile, a suspicious Jack prints out Lauren's phone records. Visiting Senator George Reed, Jack meets his wife Olivia. He then reveals to the senator the paper trail leading to his Lauren. Reed is incensed and denies his daughter's involvement.

Marshal tracks the Omnifam trucks to the Russian consulate in Gaborone, where the CIA believes Sark and Bomani have the map. Syd and Vaughn enter a function at the consulate, posing as a Russian couture designer and a waiter, respectively. They engage in a fire fight with Sark and Bomani and escape with the crystal. On the return flight, Vaughn tells Syd that he's separating from Lauren.

Marshal is unable to interpret the crystal's kaleidoscopic data. Syd gives Sloane The Iliad in return for his help. He says that there are four disks that fit into the box's carved slots. He tells them to look under water. With this information, Marshal is able to use the data to pinpoint a rock formation off the coast of Okinawa.

Lauren realises her computer has been accessed by Jack (she has an intrusion detection program). She calls Sark, who again advises her to kill her father and then frame Jack. Lauren visits her father, who's now convinced of Lauren's guilt. He suggests that he can help her get out of it and they could start over to patch their relationship. Olivia walks in, takes the gun from Lauren, and shoots him! She says, "Sark said you might back out."

During the investigation, Olivia tells Jack that, before killing himself, George had grown distraught about asking Lauren to do things that he later regretted. He mentioned the Covenant, she says.

In the Sea of Japan, Syd and Vaughn scuba to an underwater cave and locate the keys. Bomani arrives and says The Passenger is Irina's legacy. Syd fights Bomani while Vaughn battles Bomani's mercenaries. Syd beats Bomani, but he destroys their scuba equipment and flees with the keys. They use a tank with a broken valve to act as a propulsion device to rocket them to the surface. On the plane back, Syd says Vaughn's problems are unfortunate, but she's hopeful. He asks her out to coffee when they get home.

Dixon refuses Lauren's resignation, telling her that she was acting at her father's instruction with what she thought was approved government protocol. Jack tells Dixon there's no reason to believe it wasn't suicide, but Dixon says they may still have reason to hold Sloane. Vaughn and Syd arrive and learn of Senator Reed's death. To Syd's dismay, Vaughn embraces Lauren. Later that night, Vaughn calls Syd to tell her he's back with Lauren.

Sloane demands to be released after he learns that Senator Reed was Covenant. But Dixon says the senator's records indicate he consulted with Sloane about Rambaldi and that Sloane handed over certain artefacts to him. The pardon has been revoked, Dixon says, and he'll be executed in two weeks.