2.01 - "The First Of Its Kind"
With Beckett in the Liberation headquarters about to give birth to an alien entity, Doors orders the facility to be evacuated. Meanwhile, at Boone's funeral, the probe thought destroyed in Russian kills Quo'on, leader of the Taelon Synod. As Sandoval begins a desperate search to find out what happened to Beckett, Zo'or finally reveals the situation surrounding the alien probe.
First Aired: 4th October 1998

2.02 - "Atavus"
When Augur gets jealous, he attempts to experience the Taelon Commonality by tapping into Da'an's frequency, accidentally cutting him from it. Without the Commonality, Da'an reverts into an Atavus - a distant primitive ancestor of the Taelons and begins feeding on the life-force of any human he comes into contact with. Zo'or orders Da'an to be killed, but Liam seems to think he has the power to restore Da'an to his Taelon-self.
First Aired: 12th October 1998

2.03 - "A Stitch In Time"
At a Companion museum which is about to be opened, Liam touches a panel on an ancient device, causing it to activate. He is transported into the future where he discovers the Liberation has ended in bloodshed. Determined to change the future, he recruits Augur to try and find out what happened. Meanwhile, Zo'or begins an experiment intended to drive Liam insane by interfering with his brainwaves.
First Aired: 19th October 1998

2.04 - "Dimensions"
When Doors attempts to have Liam killed, his shuttle explodes in interdimensional space, sending him and Augur to a parallel dimension, where Sandoval is the leader of the Liberation, and Lili is leading the assault against humanity...and winning.
First Aired: 26th October 1998

2.05 - "Moonscape"
While attempting to acquire some illegal technology in Russia, Augur is arrested, and conscripted into an off-the-books Taelon experiment to create an army of warriors capable of fighting the Jaridians. As Liam tries to free Augur from the experiment, Lili must deal with Maiya after she approaches Sandoval in the streets, causing him to become obsessed with her.
First Aired: 2nd November 1998

2.06 - "Sleepers"
After a Jaridian probe lands on Earth, the Taelons find they are being slowly cut off from the Commonality. To prevent them from morphing into Atavus, Zo'or begins rounding up humans and begins using them as cattle to increase the strength of the Commonality. But when some of the 'cattle' include Augur and Maiya, its a race against time for Lili to discover the location of the probe before its too late.
First Aired: 9th November 1998

2.07 - "Fissures"
To combat the increasing popularity of portal travel, the Taelons begin opening up lanes of interdimensional space which haven't been properly charted. But what the don't know is, they have opened the door to energy eating creatures, who not only consume electricity, but Taelon Core Energy as well. As Earth is over-run, its only a matter of time before the Taelons perish.
First Aired: 16th November 1998

2.08 - "Redemption"
Beckett goes into hiding as her CVI breaks down, allowing her to think freely for the first time in years. As the Companions order her to be killed, Liam desperately goes in search of her, hoping to finally get a chance to know his mother.
First Aired: 23rd November 1998

2.09 - "Isabel"
After Maiya begins to experience a form of seizure, Augur discovers that only one 'Maiya' can exist in her universe and eventually the seizures will kill either Maiya or her dimensional double, Isabel. The only way to make them stop is for Isabel and Maiya to merge. But the task becomes more difficult when Sandoval raids the Flat Planet, taking Maiya captive.
First Aired: 28th December 1998

2.10 - "Between Heaven and Hell"
When Dr. Belman's daughter Joyce injects herself with Jaridian genetics, she evolves into a unique alien life form...something beyond the Taelons. Discovering Liam's identity, she comes up with a plan to destroy all life in the universe so she and Liam can repopulate it with a perfect species.
First Aired: 4th January 1999

2.11 - "Gauntlet"
When a Jaridian prisoner escapes from the Mothership, he takes Lili as a hostage and forces her to pilot him home. However, when they encounter an ancient alien repository left behind by the Kimera to teach the developing races. Liam follows the trail and soon discovers that the repository might just hold the key to his very existence.
First Aired: 11th January 1999

2.12 - "One Mans Castle"
Sparrow, a disabled scientist, completes his life's work by creating what he calls bio-surrogates, genetically grown people capable of holding a human consciousness. But before the project can be used for medical advancement, Zo'or takes over the program, and begins installing Jaridian weapons in the bio-surrogates.
First Aired: 18th January 1999

2.13 - "Second Chances"
Its a race against time for the Resistance to stop a project known as Second Chances, which claims to allow a person to regain their youth using Taelon technology. But when Liam discovers that the project has been implanting false memories into those who undergo the procedure as a way of ensuring devotion to the Taelons.
First Aired: 1st February 1999

2.14 - "Payback"
A terrorist begins using experimental teleportation technology to kill Taelons and the humans that serve them, seeking revenge for shutting down his research. During the manhunt however, Sandoval is videotaped abusing his authority, and the Taelons must re-define the privileges they have while on Earth.
First Aired: 8th February 1999

2.15 - "Friendly Fire"
Lili's loyalty is put to the test when Captain Paul Chandler resurfaces and plans to use her stolen shuttle as a weapon against the Taelons, by flying it into the Taelon Embassy. But when Sandoval begins a search to recover the craft for Zo'or, the Liberation must find Chandler first.
First Aired: 15th February 1999

2.16 - "Volunteers"
The Liberation looks into the Taelon Volunteers programme, when they believe that volunteers are being trained as soldiers for war against the Jaridians...and for taking over Earth. Liam sends a resistance member undercover to infiltrate the Volunteers Crops while he tries to win the trust of a young woman they freed from the programme.
First Aired: 22nd February 1999

2.17 - "Bliss"
A desperate search begins to find Ma'el's lab in Ireland, when Lili, and several thousand others, become infected by a deadly virus known only as 'Bliss', which originated from Strandhill. However, when the Taelons deny all knowledge of the substance, the question remains: where did it come from?
First Aired: 12th April 1999

2.18 - "Hijacked"
When a reported comes aboard the Mothership, Liam comes under suspicion a a saboteur and member of the Resistance when the ship is hijacked and sets off on a course for the Jaridian homeworld. Thing become more complicated when the reporter videotapes Liam using his shaquarava.
First Aired: 19th April 1999

2.19 - "Defector"
As Da'an begins an ancient Taelon ritual of self-renewal, a Taelon renegade crash lands on Earth hoping to defect and join the Liberation Movement. As Sandoval begins a search for the Taelon, Liam must learn to trust Be'lie when he learns that it was Da'an who designed the Taelon plan for galactic domination.
First Aired: 26th April 1999

2.20 - "Heroes and Heartbreak"
When Augur is recruited to fix the bugs in a mysterious project code named 'Forge', involving state-of-the-art technology, he soon discovers he is in way of his head. The project is actually a Taelon one to turn Earth into the largest cannon ever conceived, capable of wiping out the Jaridians.
First Aired: 3rd May 1999

2.21 - "Message In A Bottle"
As a Jaridian probe crash lands on Earth, Liam, Augur and Julia are taken prisoner by an advanced commando unit who have been working to remove the Taelons by force since the day they arrived. But the situation takes an unexpected turn when they discover that the one leading the troops is the real Liam Kincaid.
First Aired: 10th May 1999

2.22 - "Crossfire"
In the run-up to the Presidential elections, the Liberation works to uncover a Taelon plot to have Doors assassinated, ensuring that President Thompson, a Taelon supporter, stays in power, giving Zo'or unlimited power.
First Aired: 17th May 1999